A novel magnetic capture–multiplex PCR assay for the simultaneous detection of three foodborne pathogens

Main Article Content

Haojiang Zuo
Zhimei Xie
Xiaobei Ding
Weiwei Zhang
Jingyan Yang
Xuejun Fan
Roland Poms
Xiaofang Pei

Keywords

Escherichia coli O157, H7, foodborne pathogens, magnetic particles, multiplex PCR, Salmonella, Shigella

Abstract

Introduction Salmonella, Shigella and Escherichia coli O157: H7 are major foodborne pathogens that cause gastrointestinal diseases worldwide. Apart from food contamination, fecal pollution has been consistently associated with the transmission of these pathogens, and their rapid detection in food and stools is of significance for food safety. However, a variety of factors associated with these complex samples can decrease the sensitivity and specificity of molecular-based methods for detection of these pathogens. Objectives The aim of this study was to develop a DNA-based method for the simultaneous detection of E. coli O157: H7, Salmonella and Shigella in stool and food samples. Methods In this study, a novel magnetic capture–multiplex polymerase chain reaction (PCR) assay was developed and its potential to detect the target pathogens in stool and food samples (including chicken, cucumbers and cooked rice) was tested. Results The results showed that the magnetic particles (MPs) used in the study had a high capacity for bacterial adsorption. The pretreatment protocol, which included the pathogen concentration by MPs, was developed and the sensitivity of the assay was approximately 10° colony-forming unit (CFU) g-1 in food and 1–10 CFUs per stool sample, following an enrichment step. The assay could be completed within 12 h, and was comparable in performance with conventional culture methods, which require several days to complete. Conclusion The assay combines MP based magnetic capture with multiplex PCR, and offers an efficient, rapid, sensitive and inexpensive alternative for the routine detection of foodborne pathogenic bacteria.

Abstract 344 | PDF Downloads 453

References

Akane A., Shiono H., Matsubara K., Nakamura H., HasegawaM., Kagawa M. (1993) Purification of forensic specimens for the polymerase chain reaction (PCR) analysis. Journal of Forensic Sciences, 38, 691–701.
Al-Ajmi D., Padmanabha J., Denman S.E., Gilbert R.A., AlJassim R.A., McSweeney C.S. (2006) Evaluation of a PCR detection method for Escherichia coliO157: H7/H-bovine faecal samples. Letters in Applied Microbiology, 42, 386–391.
Alakomi H.L., Saarela M. (2009) Salmonella importance and current status of detection and surveillance methods. Quality Assurance and Safety of Crops & Foods,1, 142–152.
Baldauf N.A., Rodriguez-Romo L.A., Männig A., Yousef A.E., Rodriguez-Saona L.E. (2007) Effect of selective growth media on the differentiation of Salmonella enterica serovars by Fourier-transform mid-infrared spectroscopy. Journal of Microbiological Methods, 68, 106–114.
Bockstahler L.E., Johnson G.L., Berko R. (1997) Polymerase chain reaction (PCR) detection of Mycobacterium tuberculosis (Mtb) inhibited by iron. American Society for Microbiology, 97, 178.
Carlson B.A., Nightingale K.K., Mason G.L., Ruby J.R., ChoatW.T., Loneragan G.H., Smith G.C., Sofos J.N., Belk K.E.(2009) Escherichia coli O157: H7 strains that persist in feedlot cattle are genetically related and demonstrate an enhanced ability to adhere to intestinal epithelial cells. Applied and Environmental Microbiology, 75, 5927–5937.
Cheng Y., Liu Y., Huang J., Li K., Zhang W., Xian Y., Jin L.(2009) Combining biofunctional magnetic nanoparticles and ATP bioluminescence for rapid detection of Escherichia coli. Talanta, 77, 1332–1336.
Chinese National Standard. (2003): GB/T4789.5-2003: Microbiological examination of food hygiene – examination of Shigella.
Chinese National Standard. (2008a) GB/T4789.36-2008: Microbiological examination of food hygiene – examination of Escherichia coliO157: H7/NM.
Chinese National Standard. (2008b) GB/T4789.4-2008: Microbiological examination of food hygiene – examination of Salmonella.
Chiu C.H., Ou J.T. (1996) Rapid identification of Salmonella serovars in feces by specific detection of virulence genes, invA and spvC, by an enrichment broth culture-multiplex PCR combination assay. Journal of Clinical Microbiology, 34, 2619–2622.
Fiore A.D., Reverberi M., Rossil P.D., Tolaini V., Fabbri A.A., Fanelli C. (2010) Polymerase chain reaction-based assay for the early detection of aflatoxigenic fungi on maize kernels. Quality Assurance and Safety of Crops & Foods, 2,22–27.
Gillers S., Atkinson C.D., Bartoo A.C., Mahalanabis M., BoylanM.O., Schwartz J.H., Klapperich C., Singh S.K. (2009) Microscale sample preparation for PCR of C. difficile infected stool. Journal of Microbiological Methods, 78, 203–207.
Hedican E., Hooker C., Jenkins T., Medus C., Jawahir S., LeanoF., Smith K. (2009) Restaurant Salmonella Enteritidis outbreak associated with an asymptomatic infected food worker. Journal of Food Protection,72, 2332–2336.
Höss M., Kohn M., Pääbo S., Knauer F., Schröder W. (1992) Excrement analysis by PCR. Nature, 359, 199.
Huang S.H. (2006) Enterobacteriaceae. In: Bacteriological Examination, 1st edn, ed Zhang C.W. pp. 147–168, People’s Medical Publishing House, Beijing.
Kreader C.A. (1996) Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein. Applied and Environmental Microbiology, 62, 1102–1106.
Li Y., Mustapha A. (2004) Simultaneous detection ofEscherichiacoliO157: H7, Salmonella, and Shigella in apple cider and produce by a multiplex PCR. Journal of Food Protection, 67,27–33.
Mahmoud B.S. (2009) Effect of X-ray treatments on inoculatedEscherichia coliO157: H7, Salmonella enterica, Shigella flexneri and Vibrio parahaemolyticus in ready-to-eat shrimp. Food Microbiology, 26, 860–864.
Malorny B., Hoorfar J., Bunge C., Helmuth R. (2003) Multicenter validation of the analytical accuracy of Salmonella PCR: towards an international standard. Applied and Environmental Microbiology, 69, 290–296.
Medici D.D., Croci L., Delibato E., Di Pasquale S., Filetici E., Toti L. (2003) Evaluation of DNA extraction methods for use in combination with SYBR green I real-time PCR to detect Salmonella enterica serotype enteritidis in poultry. Applied and Environmental Microbiology, 69, 3456–3461.
Niyog S.K. (2005) Shigellosis. Journal of Microbiology, 43, 133–143.
Primorac D. (2004) The role of DNA technology in identification of skeletal remains discovered in mass graves. Forensic Science International,146 (Suppl), 63–64.
Rahn K., De Grandis S.A., Clarke R.C., McEwen S.A., Galán J.E.,Ginocchio C., Curtiss R., 3rd, Gyles C.L. (1992) Amplification of an invA gene sequence of Salmonella typhimurium by polymerase chain reaction as a specific method of detection of Salmonella. Molecular and Cellular Probes, 6, 271–279.
Saeed H.A., Hamid H.H. (2010) Bacteriological and parasitological assessment of food handlers in the Omdurman area of Sudan. Journal of Microbiology, Immunology and Infection, 43, 70–73.
Safarík I., Safaríková M., Forsythe S.J. (1995) The application of magnetic separations in applied microbiology. Journal of Applied Bacteriology,78, 575–585.
Seidlein V.L., Kim D.R., Ali M., Lee H., Wang X., Thiem V.D.,Canh G., Chaicumpa W., Agtini M.D., Hossain A., BhuttaZ.A., Mason C., Sethabutr O., Talukder K., Nair G.B., DeenJ.L., Kotloff K., Clemens J. (2006) A multicentre study of Shigella diarrhoea in six Asian countries: disease burden, clinical manifestations, and microbiology. PLoS Medicine, 3,1556–1569.
Sofos J.N. (2008) Challenges to meat safety in the 21st century. Meat Science, 78, 3–13.
Trevanich S., Tiyapongpattana S., Miyamoto T. (2010) Application of an optimized 18-h method involving one step culturing and single primer-based PCR assay for detection of Salmonella spp. in foods. Food Control, 21, 593–598.
Trkov M., Majerikova I., Jerasek B., Stefanovicova A., RijpensN., Kuchta T. (1999) Detection of Salmonella in food over 30 h using enrichment and polymerase chain reaction. Food Microbiology, 16, 393–399.
Wang S.M., Ma J.C., Hao Z.Y., Zhang Z.Y., Mason C., SethabutrO., Seidlein V.L., Wang X.Y., Xu Z.Y. (2010) Surveillance of shigellosis by real-time PCR suggests underestimation of shigellosis prevalence by culture-based methods in a population of rural China. Journal of Infection,61, 471–475.
Xiao X., Yang X., Liu T., Chen Z., Chen L., Li H., Deng L. (2007) Preparing a highly specific inertimmunomolecular-magnetic beads for rapid detection and separation of S. aureus and group GStreptococcus.AppliedMicrobiology and Biotechnology, 5, 1209–1216.
Yang L., Su M.Q., Yue Q.H., Ma Y.Y., Chen X.D., He X.K. (2009) Study on adsorption effect of bare magnetic particles on common food-borne pathogenic bacteria. Practical Preventive Medicine,16, 1381–1383.
Yang Z.Y., Shim W.B., Kim K.Y., Chung D.H. (2010) Rapid detection of enterotoxigenic Clostridium perfringens in meat samples using immunomagnetic separation polymerase chain reaction (IMS-PCR). Journal of Agricultural and Food Chemistry, 58, 7135–7140.
Yitzhaki S., Zahavy E., Oron C., Fisher M., Keysary A. (2006) Concentration of Bacillus spores by using silica magnetic particles. Analytical Chemistry, 78, 6670–6673.